Publications

Koren Lab




Scientific papers:

 

41.       Pitlik S & O Koren. (2017) How holobionts get sick: towards a unifying scheme of disease.
Microbiome, 5:64.

40.       Gerassy-Vainberg S, Blatt A, Danin-Poleg Y, Gershovich K, Sabo E, Nevelsky A, Daniel S, Dahan A, Ziv O, Dheer R, Abreu MT, Koren O, Kashi Y & Y. Chowers. (2017) Radiation induces proinflammatory dysbiosis: transmission of inflammatory susceptibility by host cytokine induction.

Gut, Epub Ahead of Print.


39.      Neuman H & O Koren. (2017) The gut microbiota: a possible factor influencing systemic lupus erythematosus.
Current Opinion in Rheumatology, Epub Ahead of Print.

38.      Leclercq S, Mian FM, Stanisz AM, Bindels LB, Cambier E, Ben-Amram H, Koren O, Forsythe P & J. Bienenstock. (2017) Low-dose penicillin in early life induces long-term changes in murine gut microbiota, brain cytokines and behavior.
Nature Communications, 8:15062.

37.      Neuman H & O Koren. (2017) The pregnancy microbiome.
Nestle Nutrition Institute Workshop Series, 88:1-9.

36.      Nuriel-Ohayon M., Neuman H. & O. Koren. (2016) Microbial changes during pregnancy, birth and infancy.
Frontiers in Microbiology, 7:1031.

35.     Shamriz O., Mizrahi H, Werbner M., Shoenfeld Y., Avni O*. & O. Koren*. (2016) The microbiota at the crossroads of autoimmunity.
Autoimmunity Reviews, 15(9):859-869.

34.    Kuperman A. & O. Koren. (2016) Antibiotics during Pregnancy: How bad is it?
BMC Medicine, 14(1): 91.

33.    Reed S, Neuman H, Moscovich S, Glahn RP, Koren O & E Tako. (2015) Chronic zinc deficiency alters chick gut microbiota composition and function.
Nutrients, 7(12): 9768-84.

32.    Neuman H,  Debelius, JW, Knight, R and O Koren. (2015) Microbial endocrinology: the interplay between microbiota and the endocrine system.
FEMS Microbiology Reviews, 39(4): 509-521.

31.    Kuperman A & O Koren. (2015) Editorial: The era of fecal microbiota transplantation.
The Israel Medical Association Journal, 17:2-3

30.    Chassing B, O Koren, Goodrich JK, Poole AC, Srinivasan S, Ley RE & AT Gewirtz. (2015) Dietary emulsifiers alter gut microbiota-intestinal interactions promoting colitis and metabolic syndrome.
Nature, 5(519): 92-96.

29.    Tracy A, Koren O, Douglas N, Weil E & D Harvell. (2015) Persistent shifts in Caribbean coral microbiota are linked to the 2010 warm thermal anomaly.
Environmental Microbiology Reports, 7(3): 471-9.

28.    Goodrich JK, Waters JL, Poole AC, Sutter JL, Koren O, Blekhman R, Beaumont M, Van Treuren W, Knight R, Bell JT, Spector TD, Clark AG & RE Ley. (2014) Human genetics shape the gut microbiome.
Cell, 150(4): 789-799.
Recommended by Faculty of 1000.

27.    Goodrich JK, Di Rienzi SC, Poole AC, Koren O, Walters WA, Caporaso JG, Knight R & RE Ley. (2014) Conducting a microbiome study.
Cell, 158(2): 250-262.

26.    Bel S, Elkis Y, Elifantz H, Koren O, Ben-Hamo R, Lerer-Goldshtein T, Rahimi R, Ben Horin S, Nyska A, Shpungin S & U Nir. (2014) Reprogrammed and transmissible intestinal microbiota confer diminished susceptibility to induced colitis in TMF-/- mice.
PNAS, 111(13): 4964-9.

25.    Chassing B, Koren O, Carvalho FA, Ley RE & AT Gewirtz. (2014) AIEC pathobiont instigates chronic colitis in susceptible hosts by altering microbiota composition.
Gut, 63(7): 1069-80.

24.    Di Rienzi SC*, Sharon I*, Wrighton KC, Koren O, Hug LA, Thomas BC, Goodrich JK, Bell JT, Spector TD, Banfield J* & RE Ley*. (2013) The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria.
eLIFE, 2:e01102. *These authors contributed equally.
Recommended by Faculty of 1000.

23.    Peiffer JA*, Spor A*, Jin Z, Koren O, Tringe SG, Dangl JL, Buckler ES & RE Ley. (2013) Diversity and heritability of the maize rhizosphere microbiome under field conditions.
PNAS, 110(16): 6548-53. *These authors contributed equally.

22.    Koren O*, Pena AG*, Knights D*, Waldron L, Segata N, Knight R, Huttenhower C & RE Ley. (2013) A guide to enterotypes across the human body: Meta-analysis of microbial community structures in human microbiome datasets.
PLoS Computational Biology, 9(1), e1002863. *These authors contributed equally.

21.    Koren O, Goodrich JK, Cullender TC, Spor A, Laitinen K, Backhed H, Gonzalez A, Werner JJ, Angenent LT, Knight R, Backhed F, Isolauri E, Salminen S and RE Ley. (2012) Host remodeling of the gut microbiome and metabolic changes during pregnancy.
Cell, 150(3), 470-480.
Recommended by Faculty of 1000.

20.    Carvalho FA, Koren O, Johansson M, Nalbantogl I, Aitken JD, SuY, Chassing B, Walters WA, Pena AG, Clemente JC, Barnich N, Darfeuille-Michaud A, Vijay-Kumar M, Knight R, Ley RE & AT Gewirtz. (2012) Transient inability to manage Proteobacteria promotes chronic gut inflammation in TLR5-deficient mice.
Cell, Host and Microbe, 12(2), 139-152.

19.    The Human Microbiome Consortium. (2012) Structure, function and diversity of the healthy human microbiome.  
Nature, 486, 207-214.
Recommended by Faculty of 1000.

18.    The Human Microbiome Consortium. (2012) A framework for human microbiome research.
Nature, 486, 215-221.
Recommended by Faculty of 1000.

17.    Carvalho FA, Nalbantoglu I, Ortega-Fernandez S, Aitken JD, Su Y, Koren O, Walters WA, Knight R, Ley RE, Vijay-Kumar M & AT Gewirtz. (2012) Interleukin-1b (IL-1b) promotes susceptibility of Toll-like receptor 5 (TLR5) deficient mice to colitis.
Gut, 61, 373-384.

16.    Ravussin Y*, Koren O*, Spor A, LeDuc C, Gutman R, Stombaugh J, Knight R, Ley RE & R Leibel. (2012) Response of gut microbiotas to diet composition and weight loss in lean and obese mice.
Obesity, 20(4), 738-47. *These authors contributed equally.

15.    Larsson E, Tremaroli V, Shiuan Lee Y, Koren O, Nookaew I, Fricker A, Nielsen J, Ley RE & F Backhed. (2012) Analysis of gut microbial regulation of host gene expression along the length of the gut and regulation of gut microbial ecology through MyD88.
Gut, 61:1124-31.
Recommended by Faculty of 1000.

14.    Ran-Ressler R, Khailova L, Arganbright KM, Adkins-Rieck CK, Jouni ZE, Koren O, Ley RE, Brenna JT & Dvorak B. (2011) Branched chain fatty acids alter gastrointestinal microbial ecology and reduce the incidence of necrotizing enterocolitis in a neonatal rat model.
PLoS One, 6(12), e29032.

13.    Vaishnava S, Yamamoto M, Severson KM, Ruhn KA, Yu X, Koren O, Ley RE, Wakeland EK & LV Hooper. (2011) The antibacterial lectin RegIIIg promotes the spatial segregation of microbiota and host in the intestine.
Science, 334, 255-58.
Recommended by Faculty of 1000.

12.    Werner JJ *, Koren O*, Hugenholtz P, DeSantis TZ, Walters WA, Caporaso JG, Angenent LT, Knight R & RE Ley. (2011) Impact of training sets on classification of high-throughput bacterial 16S rRNA gene surveys.
The ISME Journal, 6(1), 94-103. *These authors contributed equally.

11.    Yilmaz, P, the MIMARKS consortium*. (2011) Minimum Information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.
Nature Biotechnology, 29, 415-20. *These authors contributed equally.

10.    Spor A*, Koren O* & RE Ley. (2011) Unraveling the effects of the environment and host genotype on the gut microbiome.
Nature Reviews Microbiology, 9, 279-90. *These authors contributed equally.

9.    Koren O*, Spor A*, Felin J*, Fåk F, Stombaugh J, Tremaroli V, Behre CJ, Knight R, Fagerberg B, Ley RE & F Bäckhed. (2011) Human oral, gut and plaque microbiota in patients with atherosclerosis.
PNAS, 15:108 Suppl 1:4592-8. *These authors contributed equally.
Recommended by Faculty of 1000.

8.    Knights D, Kuczynski J, Koren O, Ley RE, Field D, Knight R, DeSantis TZ & ST. Kelley (2010) Supervised classification of microbiota mitigates mislabeling errors.
The ISME Journal, 5, 570-573.

7.    Kuczynski J, Costello EK, Nemergut DR, Zaneveld J, Lauber CL, Knights D, Koren O, Fierer N, Kelley ST, Ley RE, Gordon JI & R Knight. (2010) Direct sequencing of the human microbiome readily reveals community differences.
Genome Biology, 5, 210-219.

6.    Koren O & E Rosenberg. (2008) Bacteria associated with the bleached and cave coral Oculina patagonica.
Microbial Ecology, 55, 523-529.

5.    Rosenberg E, Koren O, Reshef L, Efrony R & I Zilber-Rosenberg. (2007) The role of microorganisms in coral health, disease and evolution.
Nature Reviews Microbiology, 5, 355-362.
Recommended by Faculty of 1000.

4.    Reshef L, Koren O, Loya Y, Zilber-Rosenberg I & E Rosenberg. (2006) The coral probiotic hypothesis.  
Environmental Microbiology, 8, 2068-2073.

3.    Koren O & E Rosenberg. (2006) Bacteria associated with mucus and tissues of the coral Oculina patagonica in summer and winter.
Applied and Environmental Microbiology, 72, 5254- 5259.
Recommended by Faculty of 1000.

2.    Knezevich V, Koren O, Ron EZ & E Rosenberg. (2006) Petroleum bioremediation in seawater using guano as the fertilizer.
Bioremediation Journal, 10, 83-91.

1.    Koren O, Knezevich V, Ron EZ & E Rosenberg. (2003) Petroleum pollution bioremediation using water-insoluble uric acid as the nitrogen source.
Applied and Environmental Microbiology, 69, 6337-6339.

Book chapters:

3.    Neuman H & O Koren. (2015) The Gut Microbiome. In Encyclopedia of Cell Biology. Elsevier.
 
2.    Koren O & RE Ley. (2015) The Human Intestinal Microbiota and Microbiome. In: Yamada’s Textbook of Gastroenterology, 6th Edition. Shanahan F (ed.). Wiley-Blackwell, West Sussex, UK.

1.    Rosenberg E & O Koren. (2006) Vibrios in Coral Health and Disease, p 231-238. In F.L. Thompson, B. Austin, and J. Swings (ed.), The Biology of Vibrios. ASM Press.